How many CVEs have patched load_data_bioc?

1 published CVEs changed load_data_bioc in run-llama/llama_index, in 1 distinct patches totalling 7 changed lines, between 2025 and 2025.

What is the latest CVE that changed load_data_bioc?

CVE-2025-3225 (XML Entity Expansion vulnerability in run-llama/llama_index), published 2025-07-07, changed lines 22 to 46 of llama-index-integrations/readers/llama-index-readers-papers/llama_index/readers/papers/pubmed/base.py.

How does load_data_bioc compare to the rest of run-llama/llama_index?

run-llama/llama_index has 26 CVEs with a located fix in total; 1 of them changed load_data_bioc.

What do the line numbers refer to?

Line numbers are in the fixed version of the file, as the upstream patch left it. A CVE whose fix was backported to several branches is listed once, with the lines from the upstream commit.

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Load_data_bioc

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Patched Functions
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Llama_index
Load_data_bioc

load_data_bioc in run-llama/llama_index: Patched by 1 CVEs

run-llama/llama_index

Function

load_data_bioc

Name: load_data_bioc in run-llama/llama_index: CVE fixes
Creator: RadicalNotion.AI
License: https://creativecommons.org/licenses/by-nc/4.0/

llama-index-integrations/readers/llama-index-readers-papers/llama_index/readers/papers/pubmed/base.py

Last patched July 7, 2025

CVEs

That changed this function

Distinct patches

Backports counted once

Lines changed

Added plus removed

2025

Years

By CVE publication date

Overview

load_data_bioc in run-llama/llama_index was changed by 1 published CVE fixes in 2025, in 1 distinct patches that added or removed 7 lines in total.

run-llama/llama_index has 26 CVEs with a located fix in total, so 4% of them touched this function.

CVEs that patched it

Every published CVE whose fix changed load_data_bioc, newest first, with the lines each fix touched.

XML Entity Expansion vulnerability in run-llama/llama_index
CVE-2025-3225 · lines 22–46 · +4 −3 in 3 hunks
High · CVSS 7.5
EPSS 0.5%2025-07-07

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Other functions in these files

Functions in the same file that CVE fixes also changed.

1load_datallama-index-integrations/readers/llama-index-readers-papers/llama_index/readers/papers/pubmed/base.py1 CVEs · 1 patches2025

Other hotspots in the repository

Functions in run-llama/llama_index changed by the most CVE fixes.

default_formatter3 CVEs · llama-index-core/llama_index/core/agent/workflow/react_agent.py load_data2 CVEs · llama-index-integrations/readers/llama-index-readers-obsidian/llama_index/readers/obsidian/base.py get_article_urls2 CVEs · llama-index-integrations/readers/llama-index-readers-web/llama_index/readers/web/knowledge_base/base.py __init__2 CVEs · llama-index-core/llama_index/core/exec_utils.py _verify_source_safety2 CVEs · llama-index-core/llama_index/core/exec_utils.py _restricted_import2 CVEs · llama-index-core/llama_index/core/exec_utils.py

All patched functions in run-llama/llama_index

Frequently asked questions

Common questions about CVE fixes to load_data_bioc.

How many CVEs have patched load_data_bioc?: 1 published CVEs changed load_data_bioc in run-llama/llama_index, in 1 distinct patches totalling 7 changed lines, between 2025 and 2025.
What is the latest CVE that changed load_data_bioc?: CVE-2025-3225 (XML Entity Expansion vulnerability in run-llama/llama_index), published 2025-07-07, changed lines 22 to 46 of llama-index-integrations/readers/llama-index-readers-papers/llama_index/readers/papers/pubmed/base.py.
How does load_data_bioc compare to the rest of run-llama/llama_index?: run-llama/llama_index has 26 CVEs with a located fix in total; 1 of them changed load_data_bioc.
What do the line numbers refer to?: Line numbers are in the fixed version of the file, as the upstream patch left it. A CVE whose fix was backported to several branches is listed once, with the lines from the upstream commit.

References

llama-index-integrations/readers/llama-index-readers-papers/llama_index/readers/papers/pubmed/base.py on GitHub (opens in a new tab)
All patched functions in run-llama/llama_index
Patched functions directory

Fix locations are computed by RadicalNotion.AI from the upstream patch diff of each CVE. CVE data is sourced from the CVE Program.

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References